species:   Scscl
pid:       PID1632
parent:    Ssc-milR-108
paralog:   
locus:     NW_001820823.1:473839-473910
matures:   ['UGGUCAAUUUGGUCAAUUUGGU', 'CAACUUGGUCAAAUUGGUCAAU']
srr:       SRR12527895
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527895.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527895.cram NW_001820823.1:473839-473910

8 out of bounds
7 alignments
4 proper strand
2 stranded perfect matches

                ***************************************                 
UUGGUCAACUUGGUCAAUUUGGUCAAUUUGGUCAAAUUGGUCAACUUGGUCAAAUUGGUCAAUUUGGGCAAU
(((.((((.(((((((((((((((((.(((((((...))))))).))))))))))))))))).)))).))).
----------UGGUCAAUUUGGUCAAUUUGGU---------------------------------------- l=22 a=0 c
-----------------------------------------CAACUUGGUCAAAUUGGUCAAU--------- l=22 a=0 c*
------------------UUGGUCAAUUUGGUCAAA------------------------------------ l=18 a=1 ma
-------------------------------------UGGUCAACUUGGUCAAAU----------------- l=18 a=0 ma*

------------------UUGGUCAAUUUGGUCAAA------------------------------------ l=18 a=1 (ma)
-------------UCAAUUUGGUCAAUUUGGUCAAAa----------------------------------- l=24 a=1 
UUGGUCAACUUGGUCAAUUUGG-------------------------------------------------- l=22 a=1 
UUGGUCAACUUGGUCAAUUUGa-------------------------------------------------- l=22 a=1 

mb-01011
ax-1011001
ku-01
ss-110010111100
fn-001
